Aevol
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Run a simulation (aevol_run)

aevol_run comes in three flavors:

  • aevol_run_2b for Standard Aevol
  • aevol_run_4b for 4-Bases Aevol
  • aevol_run_eukaryote_2b for Eukaryote Aevol

Usage of aevol_run (output of aevol_run --help)

aevol_run: run an aevol simulation.

Usage : aevol_run -h or --help
   or : aevol_run -V or --version
   or : aevol_run [-b TIMESTEP] [-e TIMESTEP] [-p NB_THREADS] [-v]

Options
  -h, --help
	print this help, then exit
  -V, --version
	print version number, then exit
  -b, --begin TIMESTEP
	specify time t0 to resume simulation at (default read in last_gener.txt)
  -e, --end TIMESTEP
	specify time of the end of the simulation
	(if omitted, run for 1000 timesteps)
  -p, --parallel NB_THREADS
	run on NB_THREADS threads (use -1 for system default)
  -v, --verbose
	be verbose
  --ui-output-dir UI_OUTDIR
	directory in which to output data for the UI
  --ui-output-frequency NB_GENER
	frequency at which to output data for the UI
	--cli-output-frequency NB_GENER
	frequency at which to output data in the CLI