Reconstruct the lineage of an individual (aevol_post_lineage)
The lineage of a given individual can be reconstructed from the tree files, provided these tree files have been saved at runtime (see Parameters).
aevol_post_lineage:
Reconstruct the lineage of a given individual from the tree files
Usage : aevol_post_lineage -h or --help
or : aevol_post_lineage -V or --version
or : aevol_post_lineage [-b TIMESTEP] [-e TIMESTEP] [-I INDEX] [-F] [-v]
Options
-h, --help
print this help, then exit
-V, --version
print version number, then exit
-b, --begin TIMESTEP
specify time t0 up to which to reconstruct the lineage
-e, --end TIMESTEP
specify time t_end of the indiv whose lineage is to be reconstructed
-I, --index INDEX
specify the index of the indiv whose lineage is to be reconstructed
(default: treat only the best)
-F, --full-check
perform genome checks whenever possible
-v, --verbose
be verbose
Note that running aevol_post_lineage with no options will reconstruct the lineage for the whole simulation, starting from the best individual of the final generation (the beginning is \(0\), and the end is the last computed generation).
# Reconstruct the lineage of the best individual at generation 1000 (Standard Aevol)
aevol_post_lineage_2b -b 0 -e 1000
# Reconstruct the lineage of the individual with index 42 at generation 1000,
# starting at generation 500 (4-Bases Aevol)
aevol_post_lineage_4b -b 500 -e 1000 -I 42