Compute statistics on ancestry (aevol_post_ancestor_stats)
This requires having reconstructed a lineage (see aevol_post_lineage)
aevol_post_ancestor_stats:
Compute statistics on ancestry described in provided lineage file.
Usage : aevol_post_ancestor_stats -h or --help
or : aevol_post_ancestor_stats -V or --version
or : aevol_post_ancestor_stats [-FMv] [-p NB_THREADS] LINEAGE_FILE PARAM_FILE
Options
-h, --help
print this help, then exit
-V, --version
print version number, then exit
-F, --full-check
perform genome checks whenever possible
-M, --trace-mutations
outputs the fixed mutations (in a separate file)
-v, --verbose
be verbose
-p, --parallel NB_THREADS
run on NB_THREADS threads (use -1 for system default)
# Compute stats along the provided lineage (Standard Aevol)
aevol_post_ancestor_stats_2b LINEAGE_FILE
# Compute stats and trace mutations along the provided lineage (4-Bases Aevol)
aevol_post_ancestor_stats_4b -M LINEAGE_FILE