Usage of aevol_post_mutagenesis (output of aevol_post_mutagenesis --help)
aevol_post_mutagenesis:
generate single-mutants of the provided individuals, using the requested mutation type; output fitness effect stats thereof.
Usage : aevol_post_mutagenesis -h or --help
or : aevol_post_mutagenesis -V or --version
or : aevol_post_mutagenesis [OPTIONS] FASTA_FILE PARAM_FILE MUTATION_TYPE
FASTA_FILE: sequence(s) of the individual(s) of interest
PARAM_FILE: parameters to be used for the experiment
MUTATION_TYPE: type of mutations to generate. Possible values:
'SWITCH', 'SMALL_INSERTION', 'SMALL_DELETION' (local mutations)
'DUPLICATION', 'DELETION', 'TRANSLOCATION', 'INVERSION' (rearrangements)
Options
-h, --help
print this help, then exit
-V, --version
print version number, then exit
-n, --nb-offspring NB_OFFSPRING
number of offspring to be generated for each individual
-v, --verbose
be verbose
--full
require additional output containing the Fitness Effect of each replication
--seed PRNG_SEED
seed to be used for prng initialization
