Publications

• Banse, Luiselli et al., Molecular Ecology, 2023
  Forward-in-time simulation of chromosomal rearrangements: The invisible backbone that sustains long-term adaptation
• Liard et al., Int. Conf. Artif. Life, 2018 <Best Paper Award>
  The Complexity Ratchet: Stronger than selection, weaker than robustness
• Frenoy et al., Plos Comp. Biol., 2013
  Genetic Architecture Promotes the Evolution and Maintenance of Cooperation
• Batut et al., BMC Bioinfo., 2013
  In silico experimental evolution: a tool to test evolutionary scenarios
• Misevic et al., Int. Conf. Artif. Life, 2012 <Best Paper Award>
  Effects of public good properties on the evolution of cooperation
• Frenoy et al., Int. Conf. Artif. Life, 2012
  Robustness and evolvability of cooperation
• Parsons, PhD Thesis, INSA-Lyon, 2011
  Indirect Selection in Darwinian Evolution: Mechanisms and Implications
• Beslon et al., Biosystems, 2010
  Scaling laws in bacterial genomes: A side-effect of selection of mutational robustness?
• Parsons et al., Int. Conf. Artif. Life, 2010
  Importance of the Rearrangement Rates on the Organization of Genome Transcription
• Knibbe et al., Mol. Biol. Evol., 2007
  A Long-Term Evolutionary Pressure on the Amount of Noncoding DNA
• Knibbe, PhD Thesis, INSA-Lyon, 2006
  Structuration des génomes par sélection indirecte de la variabilité mutationnelle, une approche de modélisation et de simulation

• Daudey et al., Int. Conf. Artif. Life, 2024
  Aevol_4b: Bridging the gap between artificial life and bioinformatics
• Knibbe et al., Int. Conf. Artif. Life, 2014
  What happened to my genes? Insights on gene family dynamics from digital genetics experiments
• Beslon et al., Europ. Conf. Artif. Life, 2013
  An alife game to teach evolution of antibiotic resistance
• Misevic et al., Europ. Conf. Artif. Life, 2013
  In silico evolution of transferable genetic elements
• Parsons et al., Int. Conf. Artif. Life, 2012
  The Paradoxical Effects of Allelic Recombination on Fitness
• Hindre et al., Nat. Rev. Microbiol., 2012
  New insights into bacterial adaptation through in vivo and in silico experimental evolution
• Parsons et al., Europ. Conf. Artif. Life, 2011
  Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability
• Knibbe et al., Europ. Conf. Artif. Life, 2011
  Parsimonious Modeling of Scaling Laws in Genomes and Transcriptomes
• Parsons et al., MajecSTIC, 2010
  Aevol : un modèle individu-centré pour l’étude de la structuration des génomes
• Beslon et al., Intel. Data Anal. J., 2010
  From digital genetics to knowledge discovery: Perspectives in genetic network understanding
• Sanchez-Dehesa, PhD Thesis, INSA-Lyon, 2009
  RÆvol : un modèle de génétique digitale pour étudier l’évolution des réseaux de régulation génétiques
• Knibbe et al., Artif. Life, 2008
  The Topology of the Protein Network Influences the Dynamics of Gene Order: From Systems Biology to a Systemic Understanding of Evolution
• Knibbe et al., J. Theor. Biol., 2007
  Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
• Knibbe et al., Europ. Conf. Artif. Life, 2005
  Self-adaptation of genome size in artificial organisms