Generate offsprings (aevol_post_replicative_robustness)
Replicative robustness performs a configurable number of replication of a given genome (under evolutionary conditions specified in a parameter file). This enables sampling the vincinity of this genome on the implicit fitness landscape specified by the Genotype-to-Phenotype map. Note that replicative robustness differ from mutational robustness in that several mutation of a same or of different types (or no mutation at all) can occur upon replication while mutational robustness considers that only events corresponding to a single mutation of a given type.
aevol_post_replicative_robustness:
Generate offsprings of the provided individuals and output fitness effect stats thereof.
Usage : aevol_post_replicative_robustness -h or --help
or : aevol_post_replicative_robustness -V or --version
or : aevol_post_replicative_robustness [OPTIONS] FASTA_FILE PARAM_FILE
FASTA_FILE: sequence(s) of the individual(s) of interest
PARAM_FILE: parameters to be used for the experiment
Options
-h, --help
print this help, then exit
-V, --version
print version number, then exit
-n, --nb-offspring NB_OFFSPRING
number of offspring to be generated for each individual
-v, --verbose
be verbose
--full
require additional output containing the Fitness Effect of each replication
--seed PRNG_SEED
seed to be used for prng initialization