Compute statistics on ancestry (aevol_post_ancestor_stats)
Note: This requires having reconstructed a lineage (see aevol_post_lineage)
Starting from a lineage file, this post-treatment reconstruct all the genomes along the line of descent and outputs the statistics of their genome architecture as well as the list of all mutations that have occured in their genomes.
aevol_post_ancestor_stats:
Compute statistics on ancestry described in provided lineage file.
Usage : aevol_post_ancestor_stats -h or --help
or : aevol_post_ancestor_stats -V or --version
or : aevol_post_ancestor_stats [-FMv] [-p NB_THREADS] LINEAGE_FILE PARAM_FILE
Options
-h, --help
print this help, then exit
-V, --version
print version number, then exit
-F, --full-check
perform genome checks whenever possible
-M, --trace-mutations
outputs the fixed mutations (in a separate file)
-v, --verbose
be verbose
-p, --parallel NB_THREADS
run on NB_THREADS threads (use -1 for system default)
# Compute stats along the provided lineage (Standard Aevol)
aevol_post_ancestor_stats_2b LINEAGE_FILE
# Compute stats and trace mutations along the provided lineage (4-Bases Aevol)
aevol_post_ancestor_stats_4b -M LINEAGE_FILE